PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G096200.1

Common Name

B456_010G096200, LOC105771511

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22764.5 Da PI: 9.9693

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G096200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.9	6.3e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+ELS+LCd+ev +++ s++gk Gorai.010G096200.1 10 RLEDMKARQAKYSKRKKGILKKAKELSILCDVEVVLLLSSPSGK 53 6788999**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.946	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.12E-21	2	57	No hit	No description
SuperFamily	SSF55455	5.49E-22	2	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-18	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGRRKLKIQR LEDMKARQAK YSKRKKGILK KAKELSILCD VEVVLLLSSP SGKPTLFVGQ 60 DPNGLYCILQ KVSNMPFVER EERRAYTLEM LKKFYVNWES EFDPLSLPRN NNVDTLKLYE 120 DQLQELKDKL TKKRKILRDW KYPENVEDLN QIKFMEDHLI ASLNGLRNRK NQLAMEQQSK 180 ERYLEGTENL EI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	134	LKDKLTKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448418.1	1e-138	PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBL	A0A0D2V855	1e-136	A0A0D2V855_GOSRA; Uncharacterized protein
STRING	Gorai.010G096200.1	1e-137	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69540.1	3e-28	AGAMOUS-like 94

Link Out ? help Back to Top
Phytozome	Gorai.010G096200.1
Entrez Gene	105771511

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]