PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G096200.2

Common Name

B456_010G096200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 165aa MW: 19383.6 Da PI: 10.0545

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G096200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.3	4.7e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++gilKKA+ELS+LCd+ev +++ s++gk Gorai.010G096200.2 10 RLEDMKARQAKYSKRKKGILKKAKELSILCDVEVVLLLSSPSGK 53 6788999**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.946	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.18E-21	2	57	No hit	No description
SuperFamily	SSF55455	3.14E-22	2	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.3E-18	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGRRKLKIQR LEDMKARQAK YSKRKKGILK KAKELSILCD VEVVLLLSSP SGKPTLFVGQ 60 DPNGLYCILQ KVSNMPFVER EERRAYTLEL YEDQLQELKD KLTKKRKILR DWKYPENVED 120 LNQIKFMEDH LIASLNGLRN RKNQLAMEQQ SKERYLEGTE NLEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	106	LKDKLTKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448418.1	1e-109	PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBL	A0A0D2UBU2	1e-114	A0A0D2UBU2_GOSRA; Uncharacterized protein
STRING	Gorai.010G096200.1	1e-109	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	1e-22	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Gorai.010G096200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]