PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G113000.4
Common NameB456_010G113000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 384aa    MW: 41722.8 Da    PI: 5.8218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G113000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.6e-25184240259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+e++++g H h+
  Gorai.010G113000.4 184 SDGYNWRKYGQKQVKSPKGSRSYYKCTFSDCQAKK-IECSDDTGHVIEVVNKGMHSHK 240
                         8********************************98.*********************7 PP
2WRKY36.11.3e-11355375323
                         -SS-EEEEEEE--TT-SS-EE CS
                WRKY   3 DgynWrKYGqKevkgsefprs 23 
                         Dgy+WrKYGqK+vkg+++pr 
  Gorai.010G113000.4 355 DGYRWRKYGQKMVKGNPNPRC 375
                         9*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-20179242IPR003657WRKY domain
SuperFamilySSF1182905.89E-20181242IPR003657WRKY domain
SMARTSM007741.3E-23183241IPR003657WRKY domain
PROSITE profilePS5081116.386184242IPR003657WRKY domain
PfamPF031063.6E-17185240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-11338377IPR003657WRKY domain
PROSITE profilePS5081114.045348383IPR003657WRKY domain
SuperFamilySSF1182906.02E-9349377IPR003657WRKY domain
SMARTSM007743.4E-4353382IPR003657WRKY domain
PfamPF031067.7E-8355377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAETESQALP TKRHHHHQND DSEGQEDDDE EEEEEDGLEN EEEEEGASRV GESQGAGAAP  60
PSDDAGLKHS QLDTLPNDDP PDGLQVNSTS ESKEGSEFKE KVNIADQEVS PSLAVLSAEA  120
PTSLSQQAPT SVTQGISSAP TPTLQEQSLS VQKVNGASVP KANQQKSYNL KMVSVVPIVK  180
TPVSDGYNWR KYGQKQVKSP KGSRSYYKCT FSDCQAKKIE CSDDTGHVIE VVNKGMHSHK  240
PPRKNNFTRE SKIVSSAARA SHNIQPIRIF NDSDPSTSSK ESVPETTVNP ERKGLFSCGS  300
DGNGDVQVKE ELTSEPETKK SMKKGNTVCS DSVLKARKKP RFVVHAAGDV GISGDGYRWR  360
KYGQKMVKGN PNPRCLFTSH IFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697680.0KF669768.1 Gossypium hirsutum WRKY transcription factor 82 (WRKY82) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449855.10.0PREDICTED: probable WRKY transcription factor 32 isoform X2
TrEMBLA0A0D2V8Q50.0A0A0D2V8Q5_GOSRA; Uncharacterized protein
STRINGGorai.010G113000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-73WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]