PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G118300.1

Common Name

B456_010G118300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 313aa MW: 34086.2 Da PI: 7.1903

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G118300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	157	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+ Gorai.010G118300.1 157 RDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHH 215 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-28	149	215	IPR003657	WRKY domain
PROSITE profile	PS50811	25.339	151	217	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-25	153	215	IPR003657	WRKY domain
SMART	SM00774	2.1E-34	156	216	IPR003657	WRKY domain
Pfam	PF03106	6.1E-25	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEPAWVDTTL DLNINPCFRT NKAMKREFEG DVVESAPVKY ENGVLVEELN RVSAENKKLS 60 KMLTVLCEQY YSLQHQFMEF VNKNPEIETA AAATTSSSKK RKAECVDYGA NMIGFSGNTE 120 TSSSDDGSPK TPKDCIKPKV YRVQVRTNPS DNSLVVRDGY QWRKYGQKVT RDNPCPRAYF 180 KCSFAPSCPV KKKVQRSAED PSILVATYEG EHNHHEHHHS PPAEISLSSN NNTPSSNTGS 240 GPVSSAPTKA SAPTVTLELL QPGLGGDETE RAALQIDAPA IQQILVHQMA ASLSRDPNFT 300 AALAAAISGR AV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-20	155	214	16	74	Probable WRKY transcription factor 4
2lex_A	4e-20	155	214	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669836	0.0	KF669836.1 Gossypium hirsutum WRKY transcription factor 83 (WRKY83) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451448.1	0.0	PREDICTED: probable WRKY transcription factor 40
TrEMBL	A0A0D2SJR6	0.0	A0A0D2SJR6_GOSRA; Uncharacterized protein
STRING	Gorai.010G118300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2477	28	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	9e-68	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Gorai.010G118300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]