PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G118300.3

Common Name

B456_010G118300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 252aa MW: 27149.3 Da PI: 7.8608

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G118300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	96	154	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+ Gorai.010G118300.3 96 RDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHH 154 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-29	87	154	IPR003657	WRKY domain
PROSITE profile	PS50811	25.339	90	156	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-25	92	154	IPR003657	WRKY domain
SMART	SM00774	2.1E-34	95	155	IPR003657	WRKY domain
Pfam	PF03106	4.2E-25	97	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MLTVLCEQYY SLQHQFMEFV NKNPEIETAA AATTSSSKKR KAECVDYGAN MIGFSGNTET 60 SSSDDGSPKT PKDCIKPKVY RVQVRTNPSD NSLVVRDGYQ WRKYGQKVTR DNPCPRAYFK 120 CSFAPSCPVK KKVQRSAEDP SILVATYEGE HNHHEHHHSP PAEISLSSNN NTPSSNTGSG 180 PVSSAPTKAS APTVTLELLQ PGLGGDETER AALQIDAPAI QQILVHQMAA SLSRDPNFTA 240 ALAAAISGRA V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-20	94	153	16	74	Probable WRKY transcription factor 4
2lex_A	2e-20	94	153	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669836	0.0	KF669836.1 Gossypium hirsutum WRKY transcription factor 83 (WRKY83) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451448.1	0.0	PREDICTED: probable WRKY transcription factor 40
TrEMBL	A0A0D2QZB4	0.0	A0A0D2QZB4_GOSRA; Uncharacterized protein
STRING	Gorai.010G118300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	5e-56	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Gorai.010G118300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]