PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G118300.5

Common Name

B456_010G118300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 223aa MW: 25052.7 Da PI: 9.3769

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G118300.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	65.8	6.9e-21	157	200	2	45
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSST CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedp 45 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv +++ p Gorai.010G118300.5 157 RDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVSVASS-P 200 7*************************99******98884.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-19	148	201	IPR003657	WRKY domain
PROSITE profile	PS50811	17.5	151	205	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-17	153	203	IPR003657	WRKY domain
SMART	SM00774	1.8E-14	156	206	IPR003657	WRKY domain
Pfam	PF03106	1.7E-16	158	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEPAWVDTTL DLNINPCFRT NKAMKREFEG DVVESAPVKY ENGVLVEELN RVSAENKKLS 60 KMLTVLCEQY YSLQHQFMEF VNKNPEIETA AAATTSSSKK RKAECVDYGA NMIGFSGNTE 120 TSSSDDGSPK TPKDCIKPKV YRVQVRTNPS DNSLVVRDGY QWRKYGQKVT RDNPCPRAYF 180 KCSFAPSCPV KKKVSVASSP RAIFVFKVIF WLRPGSKSII CF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669836	0.0	KF669836.1 Gossypium hirsutum WRKY transcription factor 83 (WRKY83) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451448.1	1e-137	PREDICTED: probable WRKY transcription factor 40
TrEMBL	A0A0D2U306	1e-164	A0A0D2U306_GOSRA; Uncharacterized protein
STRING	Gorai.010G118300.1	1e-137	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	8e-46	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Gorai.010G118300.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]