PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G124200.3

Common Name

B456_010G124200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 215aa MW: 24105.7 Da PI: 4.2007

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G124200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.8	4.1e-12	161	194	3	36
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 lkr rrk +NRe+ArrsR+RK+++++eLe v Gorai.010G124200.3 161 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQVT 194 58****************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-9	157	194	No hit	No description
Pfam	PF00170	9.6E-10	161	195	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	161	196	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.46E-8	162	196	No hit	No description
CDD	cd14702	9.81E-12	164	195	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKRSASELAL EEFSRNTMST TTIPAPSAFP DFALHPPIAH LSNSFHFTEF SGDAAELSPQ 60 THVLLSQTLT SHLDSQSSFC GNESWGSTVC EGNNSNYRSR ENEVRGATTL SSDHDPSDDD 120 DDDVEEEEDD DDDEDEEGGE GEGEVEEADA GQSEQSLDPS HLKRLRRKLS NRESARRSRK 180 RKQEQLAELE FQVTTIYSYY FCKPYRSTIL NYFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	168	LKRLRRKL
2	165	181	RRKLSNRESARRSRKRK
3	175	181	RRSRKRK
4	175	182	RRSRKRKQ
5	177	182	SRKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964183	1e-115	JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451878.1	1e-136	PREDICTED: basic leucine zipper 9
TrEMBL	A0A0D2V9E3	1e-156	A0A0D2V9E3_GOSRA; Uncharacterized protein
STRING	Gorai.010G124200.1	1e-136	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-12	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Gorai.010G124200.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]