PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G128700.1
Common NameB456_010G128700, LOC105773993
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 687aa    MW: 77445.3 Da    PI: 6.4134
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G128700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN34181e-127384001337
                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                         +el++rmwkd+++lkr++er+k   ++++ a++++k +k+++qa+rkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+g+sd++
  Gorai.010G128700.1  38 DELERRMWKDRIKLKRIRERQKI--AAQQ-ALEKQKLKKTSDQAQRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNI 125
                         79*************88888875..4455.59*********************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS
                EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182
                         raWW+ekv+fd+ngpaai+kyqa++l++ ++++   ++ + ++sl++lqD+tlgSLLs+lmqhcdppqr++plek ++pPWWPtG+e+ww 
  Gorai.010G128700.1 126 RAWWQEKVKFDKNGPAAIAKYQADCLAMIEADNG--RNGNLQSSLKDLQDATLGSLLSSLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWV 214
                         ****************************999988..68999************************************************** PP

                         HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX........ CS
                EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss........ 265
                         +lgl++ q+ ppykkphdlkk+wkv+vLt+vikhmsp+ ++ir+++rqsk+lqdkm+akes+++l vl  ee+++++ s+++         
  Gorai.010G128700.1 215 KLGLQQGQS-PPYKKPHDLKKMWKVGVLTSVIKHMSPDTAKIRRHVRQSKCLQDKMTAKESAIWLGVLACEEALIRQPSSDNGtsgvtelp 304
                         ********9.9**********************************************************************4445677666 PP

                         ...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXX......X CS
                EIN3 266 ...slrkqspkvtlsceqkedvegkkeskikhvqavktta.......................gfpvvrkrkkkpsesakvsskevsrtcq 330
                               +++++  +s+++++dv+g ++  ++ ++++++++                        ++ + +rk++  +s+  +++    + +
  Gorai.010G128700.1 305 rlgC--SDKKQPAVSTDSDYDVDGVDDGVVSVSSKDERRNqptdaepvayitnydshpvqsneRVAKQPRRKRPHLRSSHGHQQPLQIHGD 393
                         5321..3777888899999****88888778777777777788899999999999998888766666667776666666666665555555 PP

                         XXXXXX. CS
                EIN3 331 ssqfrgs 337
                         +++++++
  Gorai.010G128700.1 394 QQSVPSH 400
                         5555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.6E-12238284No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-68161293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.62E-59166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAELEDIGAD ISSDIEVDDL RCQNIAEKDV SEEEIEADEL ERRMWKDRIK LKRIRERQKI  60
AAQQALEKQK LKKTSDQAQR KKMSRAQDGI LKYMLKLMEV CKARGFVYGI IPEKGKPVSG  120
SSDNIRAWWQ EKVKFDKNGP AAIAKYQADC LAMIEADNGR NGNLQSSLKD LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKRI PPPWWPTGNE DWWVKLGLQQ GQSPPYKKPH DLKKMWKVGV  240
LTSVIKHMSP DTAKIRRHVR QSKCLQDKMT AKESAIWLGV LACEEALIRQ PSSDNGTSGV  300
TELPRLGCSD KKQPAVSTDS DYDVDGVDDG VVSVSSKDER RNQPTDAEPV AYITNYDSHP  360
VQSNERVAKQ PRRKRPHLRS SHGHQQPLQI HGDQQSVPSH GDQQPTSNHI TNYDSHPVQI  420
NERVAKQPRR KRPRLRSSHG HQQPLPIHGD QQSVLSHGDQ QPMSNHSDQQ SVPSYGDQQP  480
GPRHYEHVNA ESISTLPDIN QTDLSFMEYH MPVTEQENDA SKELRHVEDG LDVQPHLPAG  540
EYCHYPATPT ATEISTHRPM LYTLEQHELH QGAAYEFYNQ SAELRPGHDS QQTLMDMNVL  600
HVRPENGVDA SALGGNGHEI AGGELHHYVK DLLHNEQDRV VHNSFSSPTS DPSFFGGFHS  660
PFELPFDGTT SLDELLDDDL IQYFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A4e-701652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429435RKRPRLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451725.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
SwissprotO231161e-180EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0D2R7370.0A0A0D2R737_GOSRA; Uncharacterized protein
STRINGGorai.010G128700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-152ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]