PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G131300.1

Common Name

B456_010G131300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 181aa MW: 20518.7 Da PI: 7.3421

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G131300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.5e-07	80	147	20	88
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++k + ei++ ++ k+gk++ +++ + r+ + + gCk k +v++e+ d ++++t+ + +HnHe Gorai.010G131300.1 80 FRTKSDIEIMDDGYRWRKYGKKKVKNNP--NPRNYYQCSSEGCKVKKRVEREReDPRFVITTYVGKHNHE 147 466779999**********9998877..89999999*********99999***********8 PP
2	WRKY	96.9	1.4e-30	89	147	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++pr+YY+C+s+gC+vkk+ver++edp++v++tY g+Hnhe Gorai.010G131300.1 89 MDDGYRWRKYGKKKVKNNPNPRNYYQCSSEGCKVKKRVEREREDPRFVITTYVGKHNHE 147 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-33	77	148	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	81	148	IPR003657	WRKY domain
PROSITE profile	PS50811	31.479	84	149	IPR003657	WRKY domain
SMART	SM00774	6.8E-33	89	148	IPR003657	WRKY domain
Pfam	PF03106	2.4E-24	90	147	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEITSHTHHL HLDDHFLVDP EQSNCKETST FISSHGKTSA DGSCWEVPGC NSFAYQNYDD 60 KGSANTEDIN GDGLRFKIAF RTKSDIEIMD DGYRWRKYGK KKVKNNPNPR NYYQCSSEGC 120 KVKKRVERER EDPRFVITTY VGKHNHETLS PSPLSSAFDI SPSSHSTTSL PHTLQILHQP 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	79	147	7	75	Probable WRKY transcription factor 4
2lex_A	2e-26	79	147	7	75	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669804	0.0	KF669804.1 Gossypium hirsutum WRKY transcription factor 113 (WRKY113) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449110.1	1e-122	PREDICTED: probable WRKY transcription factor 50
TrEMBL	A0A0D2UDR2	1e-133	A0A0D2UDR2_GOSRA; Uncharacterized protein
STRING	Gorai.010G131300.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28505	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	9e-18	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Gorai.010G131300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]