PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G131500.2
Common NameB456_010G131500, LOC105774572
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 371aa    MW: 39527.3 Da    PI: 7.6576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G131500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20148197255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Gorai.010G131500.2 148 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 197
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-22148206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-33148206IPR001471AP2/ERF domain
SMARTSM003803.0E-37148211IPR001471AP2/ERF domain
PfamPF008473.0E-14148197IPR001471AP2/ERF domain
PROSITE profilePS5103225.712148205IPR001471AP2/ERF domain
PRINTSPR003679.2E-12149160IPR001471AP2/ERF domain
CDDcd000187.51E-15156207No hitNo description
PRINTSPR003679.2E-12171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMMQQYGNRA QATQMSGLTH GVSGQRAAAY GANLAGMASS SFGYSGSASA APPSPSPSAS  60
PSGSGSGSGS GSGLWIGQKR GREEEVTAQF IESLPRVQRN FAGFRGSIAD SSCGATTVAE  120
ETASTVAPPT TSTETSTAAY EETAERRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT  180
AEAAARAYDE AALRFRGNRA KLNFPENVRL VPQQMQNFPA TQTSVSSSLT THFPASGSTS  240
MPTYYDSLPL QSSANDMLRD YWQYSQLLQN SGDLHGQQAT SLVDQMIQYS QFANIQQPMV  300
SSSFPSLPPS FAASGSSSSS SSSSASFPLL FAEQQQMSIF RQPSDRTQAS ESDFPVPPWS  360
HPSHCPSSSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22147208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153201e-166JX615320.1 Gossypium hirsutum clone NBRI_GE59244 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452561.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A0D2R7850.0A0A0D2R785_GOSRA; Uncharacterized protein
STRINGGorai.010G131500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-24ethylene response factor 110
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]