PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G133100.1

Common Name

B456_010G133100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 168aa MW: 19024.8 Da PI: 7.0757

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G133100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.2	6.6e-16	29	73	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ien r + fskRr+gi KK +ELS+LC+ e++ ii+s+ gk Gorai.010G133100.1 29 KIIENVDDRLIAFSKRRTGIYKKISELSTLCGGEILFIILSPAGK 73 569****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-20	21	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.208	21	81	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.1E-21	22	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-14	23	43	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.6E-17	31	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-14	43	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-14	58	79	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MNFIQEEFHS KPSERLTRKL KERKKIEIKI IENVDDRLIA FSKRRTGIYK KISELSTLCG 60 GEILFIILSP AGKPYSVGHP SVESVAKHFS NASQHLEETT DAPVGTYQIR HGSKDPIDQL 120 NLKELYEQDE RFTEFNNLIS IMGNKKIAAI SSMQAPMDED VPFFLSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448706.1	5e-76	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2SS24	1e-119	A0A0D2SS24_GOSRA; Uncharacterized protein
STRING	Gorai.010G133100.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	3e-20	AGAMOUS-like 64

Link Out ? help Back to Top
Phytozome	Gorai.010G133100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]