PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G133200.1

Common Name

B456_010G133200, LOC105771870

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 152aa MW: 17619.4 Da PI: 10.1268

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G133200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.5	1.3e-16	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ien +tfskRr+gi KK +ELS+LC+ e++ iifs+ gk y + Gorai.010G133200.1 17 IENADDWLITFSKRRTGIYKKIFELSTLCGGEILFIIFSPAGKPYSF 63 888888999*********************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-20	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.689	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-21	8	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-18	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MASSDKKTKG KRKIEIIENA DDWLITFSKR RTGIYKKIFE LSTLCGGEIL FIIFSPAGKP 60 YSFGHPSVEF VAKRFSNASQ HLEETTDAPV ETYRKERINL LVQHFNHVQD QLCVIKENKK 120 EIALAQRLHG TKIRQWWKAL IDQLNLRELY K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448707.1	1e-110	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2UBG5	1e-108	A0A0D2UBG5_GOSRA; Uncharacterized protein
STRING	Gorai.010G133200.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	7e-30	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.010G133200.1
Entrez Gene	105771870

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]