PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G151400.1
Common NameB456_010G151400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 257aa    MW: 29187 Da    PI: 9.9133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G151400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-54151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+ vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat+sgyWkatg+dk+
  Gorai.010G151400.1  15 LPPGFRFHPTDEELVVHYLKRKVASVPLPV-TIIAAVDLYKFDPWELPNKASFGEQEWYFFSPRDRKYPNGARPNRATTSGYWKATGTDKP 104
                         79****************************.89***************999999************************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Gorai.010G151400.1 105 IITSnGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                         999867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-659177IPR003441NAC domain
PROSITE profilePS5100562.50115176IPR003441NAC domain
PfamPF023653.8E-2916142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MESTDSSSTS PHPQLPPGFR FHPTDEELVV HYLKRKVASV PLPVTIIAAV DLYKFDPWEL  60
PNKASFGEQE WYFFSPRDRK YPNGARPNRA TTSGYWKATG TDKPIITSNG NQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLIDSNSNSK AQIVDLPNRR ASLRLDDWVL CRIYKKNNSQ  180
RLMERDKNHS ALPSFSHQNH GSLLEHEENC YEGMLTGGSM QNSSISQIAV SSSSKQSLPW  240
CFYQQLRQIQ SQLNKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-7691799168NO APICAL MERISTEM PROTEIN
1ut4_B1e-7691799168NO APICAL MERISTEM PROTEIN
1ut7_A1e-7691799168NO APICAL MERISTEM PROTEIN
1ut7_B1e-7691799168NO APICAL MERISTEM PROTEIN
3swm_A1e-76917912171NAC domain-containing protein 19
3swm_B1e-76917912171NAC domain-containing protein 19
3swm_C1e-76917912171NAC domain-containing protein 19
3swm_D1e-76917912171NAC domain-containing protein 19
3swp_A1e-76917912171NAC domain-containing protein 19
3swp_B1e-76917912171NAC domain-containing protein 19
3swp_C1e-76917912171NAC domain-containing protein 19
3swp_D1e-76917912171NAC domain-containing protein 19
4dul_A1e-7691799168NAC domain-containing protein 19
4dul_B1e-7691799168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743324.11e-178PREDICTED: NAC transcription factor 25-like
SwissprotQ9LD441e-102NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0D2R8B30.0A0A0D2R8B3_GOSRA; Uncharacterized protein
STRINGGorai.010G151400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-104NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]