PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G155900.1

Common Name

B456_010G155900, LOC105773657

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 229aa MW: 25057.9 Da PI: 9.4195

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G155900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.2e-20	20	70	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ Gorai.010G155900.1 20 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 70 69*****.******8...557***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.1E-32	20	77	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-22	20	78	IPR016177	DNA-binding domain
CDD	cd00018	2.40E-18	20	78	No hit	No description
Pfam	PF00847	4.4E-14	20	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.894	20	77	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-38	20	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-11	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAPREKTAAV KGTGNNNEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY 60 DAAAREFRGA KAKTNFPVPC ENLSKGNNCK SNGNNNQHSP SQSSTVESSS REPALMVDSS 120 PLDLNLVQGE AVTGYVPTAV RFPFQQASPV PYIAGRKVFY FEPFVRPGAV KGHPFQRFGF 180 DHHDLHATFN GVQSDSDSSS VVDLNHHEVK SRPLLNIDLN QPAVPEIA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-21	20	78	2	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	6e-21	20	78	5	64	ATERF1
3gcc_A	6e-21	20	78	5	64	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1495	2e-64	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP780195	0.0	KP780195.1 Gossypium hirsutum C-repeat binding factor 12 (CBF12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451179.1	1e-170	PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBL	A0A0D2UD39	1e-169	A0A0D2UD39_GOSRA; Uncharacterized protein
STRING	Gorai.010G155900.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24705	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28370.1	2e-25	ERF domain protein 11

Link Out ? help Back to Top
Phytozome	Gorai.010G155900.1
Entrez Gene	105773657

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]