PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G183800.2
Common NameB456_010G183800, LOC105774819
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 356aa    MW: 39951.9 Da    PI: 6.6891
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G183800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092833172155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gorai.010G183800.2 283 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 317
                         569*****************************885 PP
2ELK41.13.6e-14237258122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK qLlrKYsgyLgsLkqEF+
  Gorai.010G183800.2 237 ELKGQLLRKYSGYLGSLKQEFM 258
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-19101145IPR005540KNOX1
PfamPF037901.1E-21103141IPR005540KNOX1
SMARTSM012564.9E-27150201IPR005541KNOX2
PfamPF037914.0E-21153200IPR005541KNOX2
SMARTSM011882.8E-8237258IPR005539ELK domain
PROSITE profilePS5121311.174237257IPR005539ELK domain
PfamPF037895.9E-11237258IPR005539ELK domain
PROSITE profilePS5007112.989257320IPR001356Homeobox domain
SuperFamilySSF466891.45E-19259334IPR009057Homeodomain-like
SMARTSM003897.4E-13259324IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-28262322IPR009057Homeodomain-like
CDDcd000861.57E-12269321No hitNo description
PfamPF059206.3E-17277316IPR008422Homeobox KN domain
PROSITE patternPS000270295318IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGGSNSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HHHPNSGSSS LFLPQPPTNN  60
QDQNHNSSSG SSMILDDQHN TTTSNNNNTG CYFMESNDGS SSVKAKIMAH PHYHRLLAAY  120
VNCQKVGAPP EVVASLEEAC ASAATTGPTR TGCIGEDPAL DQFMEAYCEM LTKYEQELTK  180
PFKEAMLFLQ RVECQFKALT VSSPNPACGE GVDRNASSEE DVDVNNNFID PLAEDRELKG  240
QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLDWWSR HYKWPYPSES QKLALAESTG  300
LDQKQINNWF INQRKRHWKP SEDMQFVVMD AAHPHYYMDN VLGNPFPMDL SPTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252261LKQEFMKKRK
2258262KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452844.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-157HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0D2UES10.0A0A0D2UES1_GOSRA; Uncharacterized protein
STRINGGorai.010G183800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-141KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]