PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G202400.1
Common NameB456_010G202400, LOC105772278
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 167aa    MW: 18894.7 Da    PI: 8.2963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G202400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000994466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC+ C++ F++   L  H  +H
  Gorai.010G202400.1 44 FKCKTCNRQFTSFQALGGHRASH 66
                        89**********99999998887 PP
2zf-C2H2110.001490112123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs    L  H+r+H
  Gorai.010G202400.1  90 HECSICGLEFSIGQALGGHMRRH 112
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-942112No hitNo description
PfamPF139124.4E-124368IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3254471IPR007087Zinc finger, C2H2
SMARTSM003550.114466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139126.2E-1090114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.22490117IPR007087Zinc finger, C2H2
SMARTSM003550.3290112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRSFSNREE ENNFALANYL ILLSQGRNMY ESTTNDSNLT CRVFKCKTCN RQFTSFQALG  60
GHRASHKKPK LMERDGGVLE NQPPAKPKMH ECSICGLEFS IGQALGGHMR RHRANLSEEN  120
HQEPLMSPLV KKANKVWCLD LNLTPFENDL ELLKLAEPTL AIDCFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449034.11e-122PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0D2VCW41e-120A0A0D2VCW4_GOSRA; Uncharacterized protein
STRINGGorai.010G202400.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-37C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]