PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G215100.1

Common Name

B456_010G215100, LOC105772137

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 225aa MW: 24463.1 Da PI: 10.2842

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G215100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C F+++ L H++ H Gorai.010G215100.1 53 FSCNYCRSKFTSPQALGGHQNAH 75 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	0.001	49	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.87E-6	50	80	No hit	No description
PROSITE profile	PS50157	10.72	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MASEAANASR VESSNLSNDN RSSRESEIGL NLSTTMNPII TSSESQPEPE RTFSCNYCRS 60 KFTSPQALGG HQNAHRQERA LAKRLREIQA QTFTPPTYPH YPYPTLSSTP YQGSLNRSIL 120 GVRLGSMIRK PLHSWTLFGS GGYLSGHGYP RLAMRNHLPP SFNGRLSINN NGGIAISGPS 180 TSSRMVTGRG PLESFARNSQ ANVGANRPAT NQNDDSEIDL TLRL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448914.1	1e-163	PREDICTED: zinc finger protein 7-like
TrEMBL	A0A0D2VDB6	1e-162	A0A0D2VDB6_GOSRA; Uncharacterized protein
STRING	Gorai.010G215100.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24595	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	7e-16	zinc finger protein 7

Link Out ? help Back to Top
Phytozome	Gorai.010G215100.1
Entrez Gene	105772137

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]