PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G219200.2

Common Name

B456_010G219200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 243aa MW: 27421.6 Da PI: 4.5527

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G219200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34.9	3.1e-11	108	154	16	59
TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +g +sY+rC+++ gC++ k+v+r ++d+++ +itY g+H+++ Gorai.010G219200.2 108 RGCYKRKSYFRCSHKhdqGCSAIKQVQRMEDDTQTYHITYIGTHTCR 154 5666779*****99999***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-11	105	154	IPR003657	WRKY domain
SMART	SM00774	2.2E-8	105	155	IPR003657	WRKY domain
PROSITE profile	PS50811	10.556	105	151	IPR003657	WRKY domain
Pfam	PF03106	5.9E-11	108	154	IPR003657	WRKY domain
SuperFamily	SSF118290	1.11E-10	108	154	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDTLYPWPEP ETLSSNKKRV IQQLAEGQQC ATELQVIVLQ NNKPSQQAEE LVQKILWSFN 60 QTISMLSEAG HHDEVISQNQ ATCNDDCKSQ DSSESSKRSL SAFTKDKRGC YKRKSYFRCS 120 HKHDQGCSAI KQVQRMEDDT QTYHITYIGT HTCRGQYPSM ATPRIDRLSP ILKLESEEQT 180 TTPSDVTDLD SMTMWTDVMM GGVGFEADAV SNMYSCTEIT CLDLEPVELE NGLQFDYPDF 240 AS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2641	0.0	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031091	0.0	KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds.
GenBank	KF669774	0.0	KF669774.1 Gossypium hirsutum WRKY transcription factor 88 (WRKY88) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452261.1	1e-169	PREDICTED: probable WRKY transcription factor 70
TrEMBL	A0A0D2UIZ1	0.0	A0A0D2UIZ1_GOSRA; Uncharacterized protein
STRING	Gorai.010G219200.1	1e-168	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	8e-23	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Gorai.010G219200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]