PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G232100.1
Common NameB456_010G232100, LOC105772397
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 171aa    MW: 19408.4 Da    PI: 7.9918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G232100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.12.2e-3116113296
              DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                         C aCk++rr+C++ C++apyfp+ ++++++n+hklFG  + nv+kl++++ +++++++a+++++ ++++ra+dPv G+++vi++lq+q+e+
  Gorai.010G232100.1  16 CLACKYQRRRCPAYCPFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTIeDPSKKDIAIRTIMVQSDMRAKDPVGGCYRVIQELQHQIEC 106
                         9***********************************733789********5667799********************************** PP

              DUF260  90 lkaelal 96 
                         ++ael++
  Gorai.010G232100.1 107 TQAELDQ 113
                         ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.80614118IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3016113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSIPTSGNTA IVTEDCLACK YQRRRCPAYC PFAPYFPHGH EQQLKNMHKL FGSGMVNVIK  60
LVRTIEDPSK KDIAIRTIMV QSDMRAKDPV GGCYRVIQEL QHQIECTQAE LDQIYYTIAI  120
CRTQNAHRLQ MQKIDDGDRC QMMNKLPLIG FETEKLANLS IKSDDNIGEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-191611512108LOB family transfactor Ramosa2.1
5ly0_B1e-191611512108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449125.11e-126PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW12e-30LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A0D2UJJ81e-125A0A0D2UJJ8_GOSRA; Uncharacterized protein
STRINGGorai.010G232100.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2210235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-33LOB domain-containing protein 22
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]