PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G245200.3

Common Name

B456_010G245200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 250aa MW: 27735.9 Da PI: 5.7209

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G245200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.9	5.7e-10	4	45	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +++ ++lfC+ ++ +lC++C +++H H + Gorai.010G245200.3 4 KLCDSCKSATATLFCRPDSAFLCPNCDSKIHAAnklasrHAR 45 68*****************************65566666655 PP
2	zf-B_box	28.1	4.3e-09	47	91	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ +++ C+ + lC +C +H++ H++vpl Gorai.010G245200.3 47 LVCEVCEQAPAHVTCKADAAALCVTCDRDIHSSnplarrHERVPL 91 68***************************779999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.48	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	2.6E-13	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.6E-7	4	45	IPR000315	B-box-type zinc finger
CDD	cd00021	3.39E-7	5	48	No hit	No description
PROSITE profile	PS50119	11.305	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-7	47	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.44E-7	48	91	No hit	No description
SMART	SM00336	4.6E-10	49	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MASKLCDSCK SATATLFCRP DSAFLCPNCD SKIHAANKLA SRHARVLVCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSSN PLARRHERVP LAPFYDSVKP NTAFNFLDDR YLSDVDGDAD 120 SSREEAEAAS WLLPNPNHKA HESPDVNTGQ YVFPEMDPYL DLDYGHVDPK IETQDQEQNS 180 SGTDGVVPVQ SNTVQAPMVN DHCFDMEFTT PKALPYGYNY NCNYNPHCLS HSFQMAVVRL 240 RTYQSRARK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.344	0.0	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM201761	0.0	KM201761.1 Gossypium raimondii CONSTANS-like 3 protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451874.1	1e-175	PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q940T9	1e-104	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A0D2UID4	0.0	A0A0D2UID4_GOSRA; Uncharacterized protein
STRING	Gorai.010G245200.1	1e-174	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	4e-98	CONSTANS-like 4

Link Out ? help Back to Top
Phytozome	Gorai.010G245200.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]