PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G247100.7

Common Name

B456_010G247100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 253aa MW: 27123.5 Da PI: 7.2956

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G247100.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.1	1.3e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+gLt++hvkSHLQkYRl Gorai.010G247100.7 1 MGVQGLTIYHVKSHLQKYRL 20 99*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-9	1	21	IPR009057	Homeodomain-like
Pfam	PF14379	1.9E-23	52	97	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKKPDKKETG DMLSNLDGSS GMQITEALKL 60 QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQRLGG VLAEAPGTGA SVPALGDNGL 120 ESDKKTDPAT PAPTSESPLQ DKAAKEGTSA KSHSVDESFS SHHEPLTPDS GCHVGSPAGS 180 PKGEMLKKKQ RVSMAGAFAK PEMVLPHQIL DSSINASYQQ SQSVFMGEQF NPSSGISIRN 240 ENQSGKGSGT EL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450884.1	0.0	PREDICTED: myb family transcription factor APL
Refseq	XP_012450885.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	Q9SJW0	1e-100	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0D2UIL5	0.0	A0A0D2UIL5_GOSRA; Uncharacterized protein
STRING	EOY29060	1e-150	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.2	3e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G247100.7

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]