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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.010G249400.1 |
| Common Name | B456_010G249400, LOC105772177 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
GRAS |
| Protein Properties |
Length: 549aa MW: 61362.4 Da PI: 6.6716 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.010G249400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 415 | 6.8e-127 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+e+L++c +a+ ++d++++ l+ l++++s +g+p+qRl ay++e+L+arl +s+s++ykal+++e + sse ++++++++ ++P+
Gorai.010G249400.1 178 LKEVLIACGQALYDNDKSRVAGLMHVLEKMVSVSGEPLQRLGAYVLEGLRARLESSGSNIYKALKCQEPT---SSELMSYMHILFRICPYW 265
5789*****************************************************************9...99**************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf++ aN I e +e e+r+HiiDf+i qG+QW+ L+ aL++Rp+gpp +R+Tg+++++s+ + l+ +g++L++fA++ +vpfef+
Gorai.010G249400.1 266 KFAYTSANAVIKEVMEYEQRIHIIDFQIAQGTQWMYLIAALSKRPGGPPFIRVTGIDDSQSNhaRGGGLSIVGQKLSEFAKSYKVPFEFHD 356
**********************************************************9988889999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
++ +++++++++L+++pgEalaVn+ + lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n+++F+ r +e+l+yy+a+f+s+
Gorai.010G249400.1 357 -TSVSTSEIQVQNLNIRPGEALAVNFPYVLHHMPDESVTISNHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFSRYIETLNYYTAMFESI 446
.899*************************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
++ pr++++ri+ E+++++r+ivn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++ ++ +l++++++ yrv e++gsl+lgW
Gorai.010G249400.1 447 DVACPRDDKQRISAEQHCVARDIVNMIACEGQERVERHELLGKWRSRFMMAGFSPYPLSSLVTSAVRDMLKEYNNN-YRVVEREGSLYLGW 536
**************************************************************************66.************** PP
GRAS 363 kdrpLvsvSaWr 374
+r++ + SaWr
Gorai.010G249400.1 537 INRAMATSSAWR 548
***********8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MQTSQKHQTR VNIHRLYHQP VKDVDQFCLP HIQILENNAC SDIGSQGPSV SYQAYNDQIF 60
TLESSTAAAS IVAYDSPSAI SVSSSRSPFS PQGSQSWMSD PHHSPDNTHG SPFSGSSVVD 120
DSNGLKHKLR ELEVSLLGPE SDIIDSCNCC FTSGAHQAAS MAGLNHEQLV DMIPRLDLKE 180
VLIACGQALY DNDKSRVAGL MHVLEKMVSV SGEPLQRLGA YVLEGLRARL ESSGSNIYKA 240
LKCQEPTSSE LMSYMHILFR ICPYWKFAYT SANAVIKEVM EYEQRIHIID FQIAQGTQWM 300
YLIAALSKRP GGPPFIRVTG IDDSQSNHAR GGGLSIVGQK LSEFAKSYKV PFEFHDTSVS 360
TSEIQVQNLN IRPGEALAVN FPYVLHHMPD ESVTISNHRD RLLRLVKSLS PKVVTLVEQE 420
SNTNTSPFFS RYIETLNYYT AMFESIDVAC PRDDKQRISA EQHCVARDIV NMIACEGQER 480
VERHELLGKW RSRFMMAGFS PYPLSSLVTS AVRDMLKEYN NNYRVVEREG SLYLGWINRA 540
MATSSAWR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
