PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G004400.1
Common NameB456_011G004400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 213aa    MW: 23299.8 Da    PI: 9.7213
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G004400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32117173158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh hAlrR+RgsgGrF
  Gorai.011G004400.1 117 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGSGGRF 173
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.0E-36115176IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.834116176IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27118173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.9E-24119141IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860121141IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.9E-24150173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTSSVHDLYD DNEVGEQQKH LEPHNQSSSP ATGLSPSAIT TRNIPYMTSQ HAAAPATYPY  60
PDPYYRSIFA PYDAQRYPPQ PCGGSLKGNI PCPYSNVHLQ LMGIQQAGVP LPSGAVEEPV  120
FVNAKQYHGI LRRRQSRAKA ESENKAIKSR KPYLHESRHL HALRRARGSG GRFLNSKKNE  180
SKQNDAASGD KSQSNINLNS NKSEVSSVEG TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21116181166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4721775e-50AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717418.11e-140PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_016717419.11e-140PREDICTED: nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP16e-69NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0D2UK931e-155A0A0D2UK93_GOSRA; Uncharacterized protein
STRINGGorai.011G004400.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-59nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]