PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G006600.1
Common NameB456_011G006600, LOC105776512
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 386aa    MW: 42363.9 Da    PI: 5.2383
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G006600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31219277259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Gorai.011G006600.1 219 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 277
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-31212279IPR003657WRKY domain
PROSITE profilePS5081133.109213279IPR003657WRKY domain
SuperFamilySSF1182902.35E-26216279IPR003657WRKY domain
SMARTSM007741.4E-37218278IPR003657WRKY domain
PfamPF031067.6E-26220277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MFFGLEMENY QGDLNDIVRA SAEPAHFSDM VPQLSSWQQE FPSSDPLSFS SSAMEDDYST  60
NTFGDPFSAI RDPLLLLQEL NVVGTGSSST YFNNSPNSTN DHHHMGGFDD MTSPCNIFSR  120
IQISHSSNPL PPCDPPRMAA ASTGLGGHKA PAVFPSDMVN AKSCLIDNTA AAASVPVQIS  180
SPRNLGIKRR LGKSQGKKVV CIPAPAAANS RSSGEVVPSD LWAWRKYGQK PIKGSPYPRG  240
YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SQPSKPNANN  300
TGSKMGSPSD SEPQKTTKET IKEETEMDDM AKQQLDIDEA TTVETQQQQH DQDFFADLDE  360
ILFDQQKENK PMDPFTLFDY NNASF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25193280280Disease resistance protein RRS1
5w3x_D2e-25193280280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384581e-115KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454645.10.0PREDICTED: probable WRKY transcription factor 14 isoform X1
SwissprotQ9SA804e-94WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A0D2VGJ00.0A0A0D2VGJ0_GOSRA; Uncharacterized protein
STRINGGorai.011G006600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.13e-88WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]