PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G008700.1
Common NameB456_011G008700, LOC105776112
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 760aa    MW: 83147.8 Da    PI: 7.3032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G008700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11712757447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         WT eE++ l+++ +++G+  Wk+I +      k+Rt  ++k++w+++
  Gorai.011G008700.1 712 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 757
                         *****************99.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223704759IPR017930Myb domain
SMARTSM007170.0016708759IPR001005SANT/Myb domain
SuperFamilySSF466895.07E-11711757IPR009057Homeodomain-like
PfamPF139214.7E-9712758No hitNo description
CDDcd116602.71E-16712759No hitNo description
Gene3DG3DSA:1.10.10.603.5E-10712757IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR  180
SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMDNVV SASAQVPSSP HPCIDERNMD  240
NVVYASAQVP SSPHPCSDEG KMGNVVSASA EASPSPHPCA DKGNVDNVIS SSAQVPSSPH  300
PCTNKKKKIR RASFQARHKP RPRCKQPRGV VITDMEEDQP LCTKNGTPSS FEVNGCLQVA  360
SKTRSAALLD GVTDSPSEAL EVLESVALVM AGKNFHPKGS VEDSNKDKGD PTTSFYPTTH  420
HCTEKGKQIL MVNSQTSGNP NSSHRHCEGP AATADIEGYR TLSTPDIDKL RDALTSSIAD  480
LTATVADPLP KALEVAATLV SFMEAAKSLS TDGAEGDVRK EKGVPAAPMN CNFEQAQAER  540
RAPDKAIRED QDKMARSVPA SSVGHSVEPS QAKEGNETFS RPKKVPKRNL MKRNDAAHTH  600
ERRAPYEGIR EDYNKVDGSV PAPSVNHTAE PSHSKEGNEA VIRPKKVRKR SIMERNDTAH  660
ASEWEDSIDG SDGGTSGCSN RCTLPSPKTN HVSPLKESEP QKQKNRRKTN WWTHEEEQAL  720
IKGYREYGTQ WKLILESYRD ILKKRTQVDL KDKWRNLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454054.10.0PREDICTED: uncharacterized protein LOC105776112 isoform X1
TrEMBLA0A0D2UKD90.0A0A0D2UKD9_GOSRA; Uncharacterized protein
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-13TRF-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]