PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G008700.3
Common NameB456_011G008700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 737aa    MW: 80747.1 Da    PI: 7.5624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G008700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11689734447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         WT eE++ l+++ +++G+  Wk+I +      k+Rt  ++k++w+++
  Gorai.011G008700.3 689 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 734
                         *****************99.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223681736IPR017930Myb domain
SMARTSM007170.0016685736IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-11688734IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-10689734IPR009057Homeodomain-like
CDDcd116603.53E-16689736No hitNo description
PfamPF139214.5E-9689735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MGDSFPLFND RDPAVLSTLK RYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VTDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFQRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS VNTRGKALLR IKGYLEEAFR  180
SMSPALSRLA SASTTEPTVD HAASANPHPS TDEGNMDNVV SASAQVPSSP HPCIDERNMG  240
NVVSASAEAS PSPHPCADKG NVDNVISSSA QVPSSPHPCT NKKKKIRRAS FQARHKPRPR  300
CKQPRGVVIT DMEEDQPLCT KNGTPSSFEV NGCLQVASKT RSAALLDGVT DSPSEALEVL  360
ESVALVMAGK NFHPKGSVED SNKDKGDPTT SFYPTTHHCT EKGKQILMVN SQTSGNPNSS  420
HRHCEGPAAT ADIEGYRTLS TPDIDKLRDA LTSSIADLTA TVADPLPKAL EVAATLVSFM  480
EAAKSLSTDG AEGDVRKEKG VPAAPMNCNF EQAQAERRAP DKAIREDQDK MARSVPASSV  540
GHSVEPSQAK EGNETFSRPK KVPKRNLMKR NDAAHTHERR APYEGIREDY NKVDGSVPAP  600
SVNHTAEPSH SKEGNEAVIR PKKVRKRSIM ERNDTAHASE WEDSIDGSDG GTSGCSNRCT  660
LPSPKTNHVS PLKESEPQKQ KNRRKTNWWT HEEEQALIKG YREYGTQWKL ILESYRDILK  720
KRTQVDLKDK WRNLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454054.10.0PREDICTED: uncharacterized protein LOC105776112 isoform X1
TrEMBLA0A0D2UMD80.0A0A0D2UMD8_GOSRA; Uncharacterized protein
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-13TRF-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]