PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G011700.1
Common NameB456_011G011700, LOC105776833
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 352aa    MW: 39746.5 Da    PI: 6.4506
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G011700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092783122155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gorai.011G011700.1 278 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 312
                         569*****************************885 PP
2ELK35.62e-12232253122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK+ Ll+ YsgyLgsLkqEF+
  Gorai.011G011700.1 232 ELKDKLLQRYSGYLGSLKQEFM 253
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2193137IPR005540KNOX1
PfamPF037902.3E-2395133IPR005540KNOX1
SMARTSM012561.2E-24143194IPR005541KNOX2
PfamPF037911.3E-20147193IPR005541KNOX2
PROSITE profilePS5121311.121232252IPR005539ELK domain
SMARTSM011883.1E-7232253IPR005539ELK domain
PfamPF037892.3E-10232253IPR005539ELK domain
PROSITE profilePS5007112.989252315IPR001356Homeobox domain
SuperFamilySSF466891.41E-19254329IPR009057Homeodomain-like
SMARTSM003897.4E-13254319IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-28257317IPR009057Homeodomain-like
CDDcd000862.84E-12264316No hitNo description
PfamPF059206.2E-17272311IPR008422Homeobox KN domain
PROSITE patternPS000270290313IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHH MDSNNPLFLP LPPTNNQDPN  60
HNSTSGSPSM ILNNTGCYFM ENNNNDDDGS SSSSMKAKIM SHPHYHRLLA AYVNCQKVGA  120
PPEVVARLEE ACATAATVGG TSSTSYMGED PALDQFMEAY CEMLIKYEQE LSKPFKEAMV  180
FLQRIECQFK ALTVSSSNSA YGTETFERNG SSEEETDVNN KSFIDPLAED RELKDKLLQR  240
YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL AESTGLDQKQ  300
INNWFINQRK RHWKPSEDMQ FVVMDGTHNP HYFMDNVVGN PFPMDLSPTF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247256LKQEFMKKRK
2253257KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455214.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-148HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0D2RF820.0A0A0D2RF82_GOSRA; Uncharacterized protein
STRINGGorai.011G011700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-134KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]