PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G019900.1
Common NameB456_011G019900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 205aa    MW: 23205.7 Da    PI: 5.8157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G019900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-112367655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         ++ErrRR+++ +++ +Lr+l+P       + ++Ka+i   A+ YI++Lq
  Gorai.011G019900.1 23 LQAERRRRQKLSDRLLTLRSLVPII-----TNMNKATIIDDAITYIQELQ 67
                        579*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.99E-111571No hitNo description
SuperFamilySSF474592.49E-161683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.0341766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-141784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-82267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-122372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRRKLEDDD DNNNSKEFKS KNLQAERRRR QKLSDRLLTL RSLVPIITNM NKATIIDDAI  60
TYIQELQKTS QVLSEQLLEM EGSSEESVMP MKLEIAVAQH DMKKCGIKEE VKVSNIDGNK  120
FLIKIIVEKK RGCFTQLIEA MNYLGFELSE TNVTTFSGAM LFSSCVHGKY GDTLMVEHIE  180
ELLSEMMRSM KTSSQSAIEL GNTN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456992.11e-148PREDICTED: transcription factor DYT1
TrEMBLA0A0D2VH361e-147A0A0D2VH36_GOSRA; Uncharacterized protein
STRINGGorai.011G019900.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.18e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]