PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G020100.3

Common Name

B456_011G020100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 247aa MW: 27323.7 Da PI: 8.6097

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G020100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	138	175	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.011G020100.3 138 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 175 67788899******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.087	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-12	136	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-9	136	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.38E-6	136	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDSTYECPPT LLFDTDPQQQ SVFNNNNQSI NYMSCSSLSS SPSWPKLAPP LTTKQQQQPP 60 VGTGTLQFSN NTSFWNASAT GNILPSLYEE KPNCPTLTTK TNIEEVRKNS NSKKASNETP 120 LKRPRLETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN 180 VLSTPYMKQA AASIQQSTDK LKDHQEGPKQ DLRSRGLCLV PVSSTFPVAN ETPADFWTPT 240 FGGTFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147230	1e-54	EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457544.1	1e-180	PREDICTED: transcription factor bHLH112-like
Swissprot	Q94JL3	2e-62	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A0D2VH40	0.0	A0A0D2VH40_GOSRA; Uncharacterized protein
STRING	Gorai.011G020100.1	1e-180	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G020100.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]