PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G021300.3
Common NameB456_011G021300, LOC105776454
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 171aa    MW: 19247.7 Da    PI: 9.6014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G021300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151259148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l+ ++k++G  +W+  a+  g+ R++k+c++rw +yl
  Gorai.011G021300.3 12 KGAWSPEEDKKLIAYIKRYGIWNWAEMAKPAGLQRSGKSCRLRWVNYL 59
                        79******************99************************97 PP
2Myb_DNA-binding59.95.4e-1966109247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g++T+eE+e ++d++++lG++ W+ Ia++++ gRt++++k++w+ +
  Gorai.011G021300.3  66 GNFTKEEEETIIDLHEKLGNR-WSVIASKLP-GRTDNEIKNHWHAH 109
                         89*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.057759IPR017930Myb domain
SuperFamilySSF466893.67E-3110106IPR009057Homeodomain-like
SMARTSM007172.7E-111161IPR001005SANT/Myb domain
PfamPF002496.6E-141259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-241366IPR009057Homeodomain-like
CDDcd001679.00E-101459No hitNo description
PROSITE profilePS5129426.70660114IPR017930Myb domain
SMARTSM007173.5E-1764112IPR001005SANT/Myb domain
PfamPF002498.2E-1766109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2667115IPR009057Homeodomain-like
CDDcd001671.78E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAKSVENRAL KKGAWSPEED KKLIAYIKRY GIWNWAEMAK PAGLQRSGKS CRLRWVNYLR  60
PGIKHGNFTK EEEETIIDLH EKLGNRWSVI ASKLPGRTDN EIKNHWHAHL SKRLKYDLNS  120
LPDMSDAEID QYSSFETDPP PTNVPNALIS ESSAATSTNS LPSSSSNPKQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-28311418128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591832e-70AJ459183.1 Gossypium hirsutum partial myb153 gene, clone pGhMYB153.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454562.11e-123PREDICTED: myb-related protein Myb4-like
RefseqXP_016731212.11e-123PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX87e-52MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0D2VFS21e-122A0A0D2VFS2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MWJ71e-122A0A1U8MWJ7_GOSHI; myb-related protein Myb4-like
STRINGGorai.011G021300.11e-123(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-54myb domain protein 14
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]