PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G025600.1

Common Name

B456_011G025600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 159aa MW: 17384.2 Da PI: 9.1803

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G025600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104	8.8e-33	19	69	9	59
zf-Dof 9 prCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + Cds ntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Gorai.011G025600.1 19 SLCDSLNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNQR 69 56*******************************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	23.943	16	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-28	21	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-19	21	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MGLSSKQVSS DGGHGWSQSL CDSLNTKFCY YNNYNKSQPR HFCKACKRHW TKGGTLRNVP 60 VGGGRKNQRL KPGIKAASTA IKTSTASSLE FPFSSSSSSS ISPSNYNYTG EANSSRSQTW 120 QVPSASMDMA NYWNLDDIDE LVSTDLNNIP WVDSEIKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726204.1	4e-87	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0D2ULE3	1e-113	A0A0D2ULE3_GOSRA; Uncharacterized protein
STRING	Gorai.011G025600.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G025600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]