PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G030600.1
Common NameB456_011G030600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 249aa    MW: 28166.2 Da    PI: 5.3801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G030600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.21.2e-4711275128
                 NAM   5 frFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         frFhPtdeel+ +yL++kv  ++  + ++++i++v+iyk++Pw+Lp k+  +e+ew+fFs+r++ky++g+r+nra++sgyWkatg+dk+++
  Gorai.011G030600.1   1 FRFHPTDEELIIHYLNQKVFPSSnhHLMFSIIADVNIYKFNPWELPDKALFGENEWFFFSPRERKYPNGTRPNRAAASGYWKATGTDKPII 91 
                         8*****************9777643555688***************8777899*************************************9 PP

                 NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +++  g+kk Lvfykgr pkg+ktdW+m eyrl
  Gorai.011G030600.1  92 ASvGSQCLGMKKALVFYKGRPPKGVKTDWMMIEYRL 127
                         9978888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023659.0E-231127IPR003441NAC domain
PROSITE profilePS5100554.8851154IPR003441NAC domain
SuperFamilySSF1019411.44E-561154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
FRFHPTDEEL IIHYLNQKVF PSSNHHLMFS IIADVNIYKF NPWELPDKAL FGENEWFFFS  60
PRERKYPNGT RPNRAAASGY WKATGTDKPI IASVGSQCLG MKKALVFYKG RPPKGVKTDW  120
MMIEYRLLDD CFVSQRPKGS MQLDDWVLCR VSHKGKAPLA GGYLQGQEMA IQITIGINEY  180
DHQLPTMDQM IGLESEELDE KVFQEGSPEY PPTPIDTSVR EVLKSIERVL SVGALDELVM  240
ASSSDDAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-61115424168NAC domain-containing protein 19
3swm_B1e-61115424168NAC domain-containing protein 19
3swm_C1e-61115424168NAC domain-containing protein 19
3swm_D1e-61115424168NAC domain-containing protein 19
3swp_A1e-61115424168NAC domain-containing protein 19
3swp_B1e-61115424168NAC domain-containing protein 19
3swp_C1e-61115424168NAC domain-containing protein 19
3swp_D1e-61115424168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453110.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ9LD441e-68NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A0D2UNA70.0A0A0D2UNA7_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.011G030600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1928557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-71NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]