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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Gorai.011G030900.8 | ||||||||
| Common Name | B456_011G030900 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | ARF | ||||||||
| Protein Properties | Length: 684aa MW: 74748.1 Da PI: 6.8099 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 78.2 | 8.9e-25 | 138 | 239 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae++ ++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F
Gorai.011G030900.8 138 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyDQ-QRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-- 225
99****************************9743.345679************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
+ +++el+++++r+
Gorai.011G030900.8 226 RGEDGELRLGIRRA 239
449999*****996 PP
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| 2 | Auxin_resp | 116.7 | 2e-38 | 264 | 347 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsL 82
a+ha+s+ksvF+++YnPras+seF+v+v k++k+l++++svGmRfkm+fete+++er++ sG+++g+sdldpvrWp+SkW++L
Gorai.011G030900.8 264 AVHAISMKSVFSIYYNPRASSSEFIVPVCKFRKSLDRSFSVGMRFKMRFETENAPERSCrsSGLITGTSDLDPVRWPGSKWKCL 347
79********************************************************999**********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.22E-42 | 134 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 135 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.42E-23 | 136 | 238 | No hit | No description |
| PROSITE profile | PS50863 | 13.465 | 138 | 240 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 8.4E-24 | 138 | 240 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.5E-23 | 138 | 239 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 7.2E-33 | 264 | 347 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0010050 | Biological Process | vegetative phase change | ||||
| GO:0010158 | Biological Process | abaxial cell fate specification | ||||
| GO:0010582 | Biological Process | floral meristem determinacy | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 684 aa Download sequence Send to blast |
MGCLIDLNAT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY 60 FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHAEGAT DEVYAQVSLV PDNEKLQEVD 120 GEDEDAEADM KLATPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYD QQRPSQELVA 180 KDLHGVEWRF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG ELRLGIRRAA 240 QIKNGASFLS LCSKQLNRST FADAVHAISM KSVFSIYYNP RASSSEFIVP VCKFRKSLDR 300 SFSVGMRFKM RFETENAPER SCRSSGLITG TSDLDPVRWP GSKWKCLSVR WDDIDANKHG 360 RVSHWEIELS GSISSSNCLL SPCSKRNRVG LPSGKPEFMV PDGIGAPDFG EPLRFQKVLQ 420 GQEILGFSTL YNSADSHNMH WSEIRRCFPG SNGSGIATIG NVGRDPPLNP VISYKGVGFG 480 ESFGFHKVLQ GQEIFLSSLY RRGSTMEETR GNDSAGLPNV GQMSGTRSGW SSSMQGYNTH 540 SPVQPSAQVS SPSSVLMFQQ ASNPVPNFNP TRNFNQEMER GVSSFRVPET YGAKLLSSSI 600 SEHDSQPLAA QPSFGTNQEL ASCKSSCRLF GFSLTEGDLD ATKEDNMVHA TLSLGRGSLL 660 PCIGENFHPN PPAVASTVWK QLY* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldx_A | 1e-111 | 32 | 378 | 15 | 363 | Auxin response factor 1 |
| 4ldx_B | 1e-111 | 32 | 378 | 15 | 363 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Detected during gynoecium development. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00021 | PBM | Transfer from AT2G33860 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012456158.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X5 | ||||
| Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
| TrEMBL | A0A0D2T1N3 | 0.0 | A0A0D2T1N3_GOSRA; Auxin response factor | ||||
| STRING | Gorai.011G030900.1 | 0.0 | (Gossypium raimondii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33860.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Gorai.011G030900.8 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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