PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G035500.9
Common NameB456_011G035500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27440.1 Da    PI: 9.6569
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G035500.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-312473150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Gorai.011G035500.9 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 73
                        79***********************************************8 PP
2K-box109.73.2e-3691185498
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++ s++e +a+ +qqe++kL+++i+nLq+ +Rh+lGe+++ L +keL++Le++Lek++++iRskKnell+++ie++qkke +l+++n+ L
  Gorai.011G035500.9  91 SNTGSVAEVNAQFYQQEADKLRNQIRNLQNINRHMLGESVGGLPMKELKSLESRLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQLL 181
                         3344499************************************************************************************ PP

               K-box  95 rkkl 98 
                         r+k 
  Gorai.011G035500.9 182 RAKQ 185
                         *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.0761676IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-3417105IPR002100Transcription factor, MADS-box
CDDcd002654.73E-461791No hitNo description
PRINTSPR004045.7E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.1E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.1E-26100184IPR002487Transcription factor, K-box
PROSITE profilePS5129714.666101191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVYPNESLED SPQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSNRGRLY EYANNSVKAT IERYKKASDS SNTGSVAEVN AQFYQQEADK LRNQIRNLQN  120
INRHMLGESV GGLPMKELKS LESRLEKGIS RIRSKKNELL FAEIEYMQKK EIDLHNNNQL  180
LRAKQSMNLM PGGSSNNFED IHSQPYDSRN YFQVDALQPA ANYYNPQQQQ DQIVLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-211689174Myocyte-specific enhancer factor 2B
1tqe_Q5e-211689174Myocyte-specific enhancer factor 2B
1tqe_R5e-211689174Myocyte-specific enhancer factor 2B
1tqe_S5e-211689174Myocyte-specific enhancer factor 2B
6bz1_A6e-211696183MEF2 CHIMERA
6bz1_B6e-211696183MEF2 CHIMERA
6bz1_C6e-211696183MEF2 CHIMERA
6bz1_D6e-211696183MEF2 CHIMERA
6c9l_A5e-211689174Myocyte-specific enhancer factor 2B
6c9l_B5e-211689174Myocyte-specific enhancer factor 2B
6c9l_C5e-211689174Myocyte-specific enhancer factor 2B
6c9l_D5e-211689174Myocyte-specific enhancer factor 2B
6c9l_E5e-211689174Myocyte-specific enhancer factor 2B
6c9l_F5e-211689174Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15510.0flower| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1905470.0EF190547.1 Gossypium hirsutum MADS-box protein MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455289.11e-168PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_012455290.11e-168PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_012455291.11e-168PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ401681e-116AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A0D2VHP91e-174A0A0D2VHP9_GOSRA; Uncharacterized protein
STRINGGorai.011G035500.11e-166(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]