PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G039000.3

Common Name

B456_011G039000, LOC105777006

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 237aa MW: 27265.5 Da PI: 9.7546

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G039000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.1	2.2e-09	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v gL+++hvkSHLQ+YR+ Gorai.011G039000.3 1 MNVRGLSIAHVKSHLQMYRS 20 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-8	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MNVRGLSIAH VKSHLQMYRS KKLDEAGQVL SQSKRAIQGR GEFGSLLCQA ITTLSPHHGH 60 QQQHFRMENG GIVLASESLD GSNTTFKANF PRHHQFPNSF ISKAFGQENG FYIQNQIHGT 120 GPIRAMASRF LEEKRWHPFE RISNRWKVNG NMYKDMQSQS HCFWQRPSSD EDKHEPLTKF 180 SSCRTEFEWN QDKVLKDGER LPDLQLRLSQ RNGKFDEEKN NHCKGTHEIS TQLSLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY632360	1e-159	AY632360.1 Gossypium hirsutum BAC 106I22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455487.1	1e-178	PREDICTED: two-component response regulator ARR14-like
Refseq	XP_012455488.1	1e-178	PREDICTED: two-component response regulator ARR14-like
Refseq	XP_012455490.1	1e-178	PREDICTED: two-component response regulator ARR14-like
TrEMBL	A0A0D2T1Z4	1e-176	A0A0D2T1Z4_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2ULW1	1e-177	A0A0D2ULW1_GOSRA; Uncharacterized protein
STRING	Gorai.011G039000.1	1e-177	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-10	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G039000.3
Entrez Gene	105777006

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]