PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G044300.1

Common Name

B456_011G044300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 129aa MW: 14357.9 Da PI: 10.2237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G044300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.6e-11	28	65	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT +Ed +l+++vkq+G + W+ Ia+ + gR ++++ Gorai.011G044300.1 28 CQWTDDEDRKLIRLVKQYGVRKWAQIAESLV-GRAGNSV 65 57***************************.99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.94E-11	5	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-12	22	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.544	22	87	IPR017930	Myb domain
SMART	SM00717	0.001	26	75	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-10	28	65	IPR001005	SANT/Myb domain
CDD	cd00167	2.09E-10	30	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MKASMKGDFP KGVVKRNKKV ASAALIKCQW TDDEDRKLIR LVKQYGVRKW AQIAESLVGR 60 AGNSVERGGI IICALISRLI EYLNPNNLLT FPLMYHKEEL SHHAARAEVL QTLLFLHLVL 120 GVEQGSGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2538	3e-71	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2VI10	1e-89	A0A0D2VI10_GOSRA; Uncharacterized protein
STRING	Gorai.011G044300.1	2e-90	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-14	myb domain protein 119

Link Out ? help Back to Top
Phytozome	Gorai.011G044300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]