PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G050400.10

Common Name

B456_011G050400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 260aa MW: 30249.4 Da PI: 9.7206

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G050400.10	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	23	118	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcp 80 Wt +e+++Liea++ + e+r++r+ k + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k ++++ s+ + Gorai.011G050400.10 23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQR 112 ***********963333333322222222268899************************************999843355666777 PP trihelix 81 yfdqle 86 + ++e Gorai.011G050400.10 113 SYWEME 118 777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	15	88	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-12	22	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR 60 WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN 120 ERKEKSLPSN MLRQIYERLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF 180 QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIGRLTSKE 240 KEKRWWQWRR HQWDCKQHK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457270.1	1e-152	PREDICTED: protein enabled homolog isoform X1
Refseq	XP_012457271.1	1e-152	PREDICTED: protein enabled homolog isoform X1
Refseq	XP_012457272.1	1e-152	PREDICTED: protein enabled homolog isoform X1
TrEMBL	A0A0D2T2L3	0.0	A0A0D2T2L3_GOSRA; Uncharacterized protein
STRING	Gorai.011G050400.1	1e-151	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-61	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G050400.10

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]