PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G057600.4

Common Name

B456_011G057600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 225aa MW: 24867.3 Da PI: 9.4004

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G057600.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.2	1.2e-32	76	132	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQyq+Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF Gorai.011G057600.4 76 DEPIYVNAKQYQAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 132 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.8E-37	74	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.096	75	135	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-26	77	132	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-23	78	100	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	80	100	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-23	109	132	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MLTCVISLLL HQNPQGGNEM HGKLVGDHTK LAAPMGTLEC VLPPSQVDYS KSNIHHQLTM 60 AMLPARVPLP LELTQDEPIY VNAKQYQAIL RRRQYRAKLE AQNKLIKVRK PYLHESRHLH 120 ALKRARGNGG RFLNTKKLQE SKGITTSNGL DTCFSKSEVH QLENYKDAAS TASCSDVTTA 180 SNSDEIFQQP DFRFSTYSSH IGGPMPGHTG DMQGGGNLHH RLCG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	76	136	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454938.1	1e-157	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
Swissprot	Q93ZH2	8e-56	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0D2UPJ2	1e-167	A0A0D2UPJ2_GOSRA; Uncharacterized protein
STRING	Gorai.011G057600.1	1e-150	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-58	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.011G057600.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]