PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G058300.2
Common NameB456_011G058300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 565aa    MW: 61474.1 Da    PI: 7.8363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G058300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09449497348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Gorai.011G058300.2 449 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 497
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.926442501IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-13444504IPR009057Homeodomain-like
SMARTSM007178.3E-10446499IPR001005SANT/Myb domain
CDDcd116608.19E-20448498No hitNo description
SuperFamilySSF466891.87E-16448507IPR009057Homeodomain-like
PfamPF002493.5E-7449497IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MVDGNGRLVP ATDDELMEVE GLLENEKRET HIVADTGQAL GCISNEVSPS GMPQLESSEG  60
LSQSENTEAD TEKLSAYLEE TVPSGAKSSS DDHVTQSGRV GECLKPLDGP LEGGSSTSTG  120
CISSKPDFSK LKGEICLDNL SIKELHEVFK ATFGRDTTVK DKLWLKRRIA MGLTNSCDVS  180
ATTFVIKDNK LVKKDNEDGF NNVNLGAGKE HLAVAVEYNE DLLNNLSSQI DEHQTTSEVR  240
LGNNVVENNF ASEDLAADQR AAKRVRKPTK RYIEELSEAE SKEYSGRSIA STKSIGFRPL  300
SSKAHARPAR NVSLEGRTVI TRLDSLGGFG IQVPCVYRIR RSRPRKNVTA LLKFHPSGMG  360
MTATFIKKGF DVHGSQMDNG SMNKVLEAKS TPEQAPEQFV AESKKETTPT DMGQNMGLKY  420
VDPSGDTSDD NVVTVPTAKG GIRRKHHRAW TLSEVMKLVE GVSKYGAGRW SEIKRLAFAS  480
YSYRTSVDLK DKWRNLLKAS FAQTPTDKGA NSRKHPSMPI PASILLRVRE LAEMQAQASL  540
PNLSTGKLSA CGGGSVNETR PGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455128.10.0PREDICTED: uncharacterized protein LOC105776772
TrEMBLA0A0D2RHL30.0A0A0D2RHL3_GOSRA; Uncharacterized protein
STRINGGorai.011G058300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-126TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]