PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G058800.2

Common Name

B456_011G058800, LOC105776896

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 321aa MW: 35519.4 Da PI: 9.109

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G058800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.2	3.8e-25	73	117	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Gorai.011G058800.2 73 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 117 79****************************************986 PP
2	QLQ	57.7	3.6e-20	9	41	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 FT++Q+q+L++Q+l++Ky+++++P+Pp+Ll Gorai.011G058800.2 9 LFTPNQWQELEHQALIFKYMVSGVPIPPQLLYS 41 6*****************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.0E-10	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.858	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.5E-15	10	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	73	117	IPR014977	WRC domain
Pfam	PF08879	2.8E-21	74	116	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MISARNKYLF TPNQWQELEH QALIFKYMVS GVPIPPQLLY SVKTSFDSSL ASHLFPHQPR 60 WGCFQVGFGR KPDPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGRNR SRKPVEANSS 120 SSSSSSSSST APPAPPTTAA ASILSPSFPS INSNLPTSSS SLSFSPMATE NFTHFDPFLY 180 SHSSTRLHGS GLSVPSHHFL DSGTGIDYPQ TDKIYRYVHG TREVVDERSF FPEASGSVRV 240 VPDSYQSLTM VQSFGDNNGS KQGQQCFVLG TDIKSAKPIK LEKDEGTQKP VHQFLGDWTQ 300 GNNNGSWLDL ASNSRVQSDS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455304.1	0.0	PREDICTED: growth-regulating factor 5 isoform X2
TrEMBL	A0A0D2VIT0	0.0	A0A0D2VIT0_GOSRA; Uncharacterized protein
STRING	Gorai.011G058800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-61	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.011G058800.2
Entrez Gene	105776896

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]