PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G067500.1

Common Name

B456_011G067500, LOC105778323

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 254aa MW: 27586.3 Da PI: 8.0435

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G067500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	19	79	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+s Gorai.011G067500.1 19 EQQQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKGTKRS 79 7899****************************************************87765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	19	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-33	21	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MQDPMGFHQM KAPAFQEQEQ QQLKCPRCDS TNTKFCYYNN YNLSQPRHFC KNCRRYWTKG 60 GALRNIPVGG GTRKGTKRSS SSSTNNPKRQ PNPSPDPTPN QKIPDPSPPP PTSSSSSMFP 120 QQIVLSSGAQ NSDLDIDSTR MYLLPVDHQD GKMMDIGGSF SSLLASTGQF GNLLEGFNSN 180 GSGLKTLNHF GGNLDSGCEM DQSSGGDPRF GESSKNGESY LDAQGGRDTS CWSGDSNGWP 240 DLSIYTPGSS FRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527424	0.0	HQ527424.1 Gossypium herbaceum clone NBRI_B2_1666 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457463.1	0.0	PREDICTED: dof zinc finger protein DOF3.1
Swissprot	O82155	8e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A0D2RI21	0.0	A0A0D2RI21_GOSRA; Uncharacterized protein
STRING	Gorai.011G067500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	7e-37	DOF zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Gorai.011G067500.1
Entrez Gene	105778323

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]