PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G069200.1

Common Name

B456_011G069200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 543aa MW: 59978.2 Da PI: 7.4023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G069200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	450	490	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A Y+k L Gorai.011G069200.1 450 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 490 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	441	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-14	446	507	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-13	447	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-12	449	504	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-5	450	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-4	463	495	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MRLHPKQYGR ESKLHGVKPN ANRRYCIRNN VVKSCSSLKK VFVLYILPIY ISMHAFNTYY 60 DKLHLPRLTL AMVFFLGVDD HSFKEDGCSE SDIKLRFDPT LSYIRHSLVS FGKDNNQSGG 120 FLDLKKVSSM DGLGWNGSEI EAKSLPVWNN QRNDMEDSYF LIPNSSNSFM YGGKMDDLPE 180 DIFYQIQELQ KSGNLEDALQ QGLCSSPLMS RAYGFSTLNG SVSDIGMPVH SQGINGGDAT 240 TTGTLESLDC LISATNSNTD TSVEDDGISM IFSDCKNLWN FAASSAVSSG SENNGSNTGR 300 NEHDEIVSQS SSDRCINNGN LSQTKSSNSS KRKNDQTGLT FGPNCGYFNL LHTDLSATEG 360 GFKLIPDNPP KAKKIRSEKH SSSSNINFQQ PASSSVSSSI EEPDPEAIAQ MKEMIYRAAA 420 FRPVNLGLEV VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQKLVPG GSKMDTASML 480 DEAASYLKFL RSQVKALENL GNKLDTMNAP PPSNIAFNHS LPMQTHSFPL LNPNDHIHHS 540 QS*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MRLHPKQYGR ESKLHGVKPN ANRRYCIRNN VVKSCSSLKK VFVLYILPIY ISMHAFNTYY  60
DKLHLPRLTL AMVFFLGVDD HSFKEDGCSE SDIKLRFDPT LSYIRHSLVS FGKDNNQSGG  120
FLDLKKVSSM DGLGWNGSEI EAKSLPVWNN QRNDMEDSYF LIPNSSNSFM YGGKMDDLPE  180
DIFYQIQELQ KSGNLEDALQ QGLCSSPLMS RAYGFSTLNG SVSDIGMPVH SQGINGGDAT  240
TTGTLESLDC LISATNSNTD TSVEDDGISM IFSDCKNLWN FAASSAVSSG SENNGSNTGR  300
NEHDEIVSQS SSDRCINNGN LSQTKSSNSS KRKNDQTGLT FGPNCGYFNL LHTDLSATEG  360
GFKLIPDNPP KAKKIRSEKH SSSSNINFQQ PASSSVSSSI EEPDPEAIAQ MKEMIYRAAA  420
FRPVNLGLEV VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQKLVPG GSKMDTASML  480
DEAASYLKFL RSQVKALENL GNKLDTMNAP PPSNIAFNHS LPMQTHSFPL LNPNDHIHHS  540
QS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	450	455	RQRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577974	1e-89	JX577974.1 Gossypium hirsutum clone NBRI_GE9901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456817.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	1e-84	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0D2T3R2	0.0	A0A0D2T3R2_GOSRA; Uncharacterized protein
STRING	Gorai.011G069200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G069200.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]