PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G073400.1

Common Name

B456_011G073400, LOC105778029

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 329aa MW: 35868.1 Da PI: 6.5942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G073400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	208	246	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.011G073400.1 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.534	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-10	206	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.92E-6	206	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-7	210	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MMAGNPSWWS MHLHPPSQHP STLLTTPSPS LFPQYVVEYS ATSLPDNQEL PQSCSQLLSG 60 GFSGEEERLC PSNFQPKKLE NWENQILNPS LRVPVVEVIK QEVTQQHSNL YGHHHASEEF 120 QAPRLPVPPA AWSQIMGTAV LSPSPRSCIT TSSSNMLDFT YNKATDGSIS NTQPPVDHSS 180 ECNSKGSGGV FKKARVQTSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG 240 YIRFLQSQIE ALSSPYLGTA SPNMRNQQSG QGERNCAFPE DEGQEKQEPK SKDLRSRGLC 300 LVPVSCTQQV GSDNGADYWS PAFGAAFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457034.1	0.0	PREDICTED: transcription factor bHLH68-like
Refseq	XP_016698055.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	3e-68	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A0D2VJG9	0.0	A0A0D2VJG9_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8K6C3	0.0	A0A1U8K6C3_GOSHI; transcription factor bHLH68-like
STRING	Gorai.011G073400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G073400.1
Entrez Gene	105778029

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]