PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G074200.1

Common Name

B456_011G074200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 554aa MW: 61234.4 Da PI: 7.2479

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G074200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.5	2e-16	196	233	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a+++Cs++CkC dCkN Gorai.011G074200.1 196 HERGCHCKKSECLKRYCECFQANVFCSQNCKCVDCKNF 233 889**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	29.699	112	235	IPR005172	CRC domain
SMART	SM01114	0.047	121	150	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	9.2E-17	195	236	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-13	198	233	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MKQLEIENGD FPPKSVELVT LTSTPCYQPK RIKSVEKTSD SVKITVTERS SSHFPPKKNL 60 ARQLVFTEFG LSPIISTSSP LPVEKPGSEM HLSPRSPFSS IVVHFNAFSF QRFNLSEISH 120 AQIDRYCDCF ASGEYCNGCT CADCCNNVEN EDLRKAATEI ILERNPRAFK PKISNSPCSP 180 QDIEGDKIDS PQVGRHERGC HCKKSECLKR YCECFQANVF CSQNCKCVDC KNFEACKELI 240 TASCKEDSTS IICKNSEGCY GRIASSQMDN ASRKLYKSFK GSEGLMAITG GDCIDTKIYI 300 QRVITTTSDA TGLSGQRLSQ ESRKRKLQEL PSNEKISPSQ SFSDLQKVIS QRSSCPSSTL 360 SVGPTCHIIN SAMVGSLRDP YRLTVANVYH LLDTSKVCSG LAVLAEAAAL AQAANLFAEV 420 KDGEENKNGD ILGAKEDDYQ ERPAQVQKKA ADDFNLGFAA KDVQEGRASL PGMVGLICNE 480 KNKQLMEPTS GDQILNRNLK NAYAEQERSV LSSFLDFLEK LIISKNMKVD DALLFPFHYL 540 LRVYGTNQCF HDQ*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MKQLEIENGD FPPKSVELVT LTSTPCYQPK RIKSVEKTSD SVKITVTERS SSHFPPKKNL  60
ARQLVFTEFG LSPIISTSSP LPVEKPGSEM HLSPRSPFSS IVVHFNAFSF QRFNLSEISH  120
AQIDRYCDCF ASGEYCNGCT CADCCNNVEN EDLRKAATEI ILERNPRAFK PKISNSPCSP  180
QDIEGDKIDS PQVGRHERGC HCKKSECLKR YCECFQANVF CSQNCKCVDC KNFEACKELI  240
TASCKEDSTS IICKNSEGCY GRIASSQMDN ASRKLYKSFK GSEGLMAITG GDCIDTKIYI  300
QRVITTTSDA TGLSGQRLSQ ESRKRKLQEL PSNEKISPSQ SFSDLQKVIS QRSSCPSSTL  360
SVGPTCHIIN SAMVGSLRDP YRLTVANVYH LLDTSKVCSG LAVLAEAAAL AQAANLFAEV  420
KDGEENKNGD ILGAKEDDYQ ERPAQVQKKA ADDFNLGFAA KDVQEGRASL PGMVGLICNE  480
KNKQLMEPTS GDQILNRNLK NAYAEQERSV LSSFLDFLEK LIISKNMKVD DALLFPFHYL  540
LRVYGTNQCF HDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-21	126	234	25	122	Protein lin-54 homolog
5fd3_B	8e-21	126	234	25	122	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012456975.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 6
TrEMBL	A0A0D2VJI2	0.0	A0A0D2VJI2_GOSRA; Uncharacterized protein
STRING	Gorai.011G074200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22196	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.2	7e-51	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.011G074200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]