PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G087700.1

Common Name

B456_011G087700, LOC105778062

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 249aa MW: 28244.2 Da PI: 9.0865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G087700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.3	8.8e-38	14	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d+++++Pw++p + +++ yfFs+r+ +y + ++ +ra+ sgyWk gk+k+ Gorai.011G087700.1 14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKP 99 699*************************.99***********554...4577******86.6889999********* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++++vg+++ L+f + + ++g++t+W++h+yrl Gorai.011G087700.1 100 ILASgTNRVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 137 9967788***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-40	10	166	IPR003441	NAC domain
PROSITE profile	PS51005	43.128	14	167	IPR003441	NAC domain
Pfam	PF02365	4.0E-21	15	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP 60 GDMKESKYFF STRHDSYINN KCKRAAGSGY WKPIGKEKPI LASGTNRVVG MRRALIFCQR 120 KCSNGTQTRW LLHQYRLVDP VPTLDSTQRS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS 180 HKSETSSAMN MPSCIDFTVE ESSVFGPPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY 240 SNCCMRNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-33	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-33	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-33	12	170	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-33	12	170	15	168	NO APICAL MERISTEM PROTEIN
4dul_A	5e-33	12	170	15	168	NAC domain-containing protein 19
4dul_B	5e-33	12	170	15	168	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	171	QRKRSRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589385	2e-71	JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457098.1	0.0	PREDICTED: NAC domain-containing protein 18-like
TrEMBL	A0A0D2UPU7	0.0	A0A0D2UPU7_GOSRA; Uncharacterized protein
STRING	Gorai.011G087700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-52	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Gorai.011G087700.1
Entrez Gene	105778062

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]