PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G098600.1
Common NameB456_011G098600, LOC105775911
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 290aa    MW: 32185.3 Da    PI: 6.5081
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G098600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.4e-203293257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++R+t+t++q+++L++l+++   r psa+++++++++l    +++ ++V++WFqN++a+e++
  Gorai.011G098600.1 32 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 93
                        58*****************8678*************************************97 PP
2Wus_type_Homeobox114.36e-373195265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Gorai.011G098600.1 31 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 95
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-121195IPR009057Homeodomain-like
PROSITE profilePS5007110.3172894IPR001356Homeobox domain
SMARTSM003891.1E-53098IPR001356Homeobox domain
PfamPF000464.3E-173393IPR001356Homeobox domain
CDDcd000861.79E-73395No hitNo description
Gene3DG3DSA:1.10.10.602.7E-73393IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEPQHQHQQP HPNDDNSSGG SGKGSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPSAD  60
QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRFTST PDILPMQTPI LANATRKPDD  120
SLHNHKYPTI TPGYAPSSPP STGVLTVGQI GHNGYGSMTM EKSFRDCSIS ACGSSSGGAS  180
HNFGWVGMDP AYTTSSYAFF DKKKLFGEEQ EGDEEEEEEE GAAVAPHIET LPLFPMHGED  240
INAFCSNMKP QSADSCYSSW YRSDDGYTAS RASLELSLNS YNARSQDSI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-78AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453860.10.0PREDICTED: protein WUSCHEL-like
RefseqXP_016700610.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL115e-95WUS_PETHY; Protein WUSCHEL
TrEMBLA0A0D2RJX50.0A0A0D2RJX5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KDQ90.0A0A1U8KDQ9_GOSHI; protein WUSCHEL-like
STRINGGorai.011G098600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-53WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]