PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G102400.1
Common NameB456_011G102400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 518aa    MW: 58314.3 Da    PI: 5.7452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G102400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3021.5e-921605163374
                GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         e L+++A++++++dl+laq +L rl+++ +sp+g+p+qR+a+yf+eAL++  ++  s      p++ +s+++ ++++ a+k fs + Pi+ 
  Gorai.011G102400.1 160 EDLIRAANCFDTHDLQLAQVILDRLHQRlRSPSGEPLQRAAFYFKEALQSLFTG--S--TWPNPVRLSSWSEIIQTIEAYKSFSGINPIPM 246
                         689************************99************************9..2..2234777788888******************* PP

                GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         f h+t+Nqa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e   + e++ ++++L++fA++l+++f+++++
  Gorai.011G102400.1 247 FNHFTTNQALLEALDGSaPLIHIIDFDIGFGGQYASLMREMAERNdHSRKFIRITAVVPEE--YSFETRLIEDNLNQFAQALRLRFQIEFV 335
                         *****************7889************************556669********66..99*************************9 PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfd 269
                         +  ++e+++++++++ +gE++a+ l+ +++r l   ++++    ++++ ++++sP vvv+v++e  ++  +++sF + f+++le+y+++f+
  Gorai.011G102400.1 336 LLPTFETMSFKAFKFINGENTAILLSPSIFRSL--GLQVA----AFVSDLRRISPSVVVFVDSEvwMESgTTTSFRKNFVNCLEFYAMMFE 420
                         999*****************************9..44444....6*******************665666778****************** PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         sl+a      e+ +k+E  ll+++i ++v ++ +        +  Wre + eaG+++v+ls+ a  qa++ll+kv+++g++v +++++lvl
  Gorai.011G102400.1 421 SLDAA---GGEWVRKIETLLLRPRIFSAVEAAART------AAPAWREVFCEAGMRAVRLSQLADFQAESLLQKVQVRGFHVAKRQAELVL 502
                         **998...689******************998887......7899********************************************** PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         +W++ +L+++S+Wr
  Gorai.011G102400.1 503 CWHKTALIATSVWR 516
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.094132496IPR005202Transcription factor GRAS
PfamPF035145.1E-90160516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MRVPVCSPQG NHYPIPKPDI NNNNITITAG NISFLNSSVP ASSCEPTLDL DLRRSPSSAV  60
TEKPVSNPAD NSNCFSVSGP HQQQAGLEWD EHVLRNMDWD AILKDFGLDD ESVPATKTIP  120
PQVINPRLDN HIQNVPELTS CELTHHPLHS DFNLYESYSE DLIRAANCFD THDLQLAQVI  180
LDRLHQRLRS PSGEPLQRAA FYFKEALQSL FTGSTWPNPV RLSSWSEIIQ TIEAYKSFSG  240
INPIPMFNHF TTNQALLEAL DGSAPLIHII DFDIGFGGQY ASLMREMAER NDHSRKFIRI  300
TAVVPEEYSF ETRLIEDNLN QFAQALRLRF QIEFVLLPTF ETMSFKAFKF INGENTAILL  360
SPSIFRSLGL QVAAFVSDLR RISPSVVVFV DSEVWMESGT TTSFRKNFVN CLEFYAMMFE  420
SLDAAGGEWV RKIETLLLRP RIFSAVEAAA RTAAPAWREV FCEAGMRAVR LSQLADFQAE  480
SLLQKVQVRG FHVAKRQAEL VLCWHKTALI ATSVWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2319251636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456369.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-162SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D2T5W20.0A0A0D2T5W2_GOSRA; Uncharacterized protein
STRINGGorai.011G102400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-151GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]