PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G108400.2
Common NameB456_011G108400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 347aa    MW: 38114.4 Da    PI: 7.1592
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G108400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.41.2e-2380124145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+ep rCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e 
  Gorai.011G108400.2  80 DPEPERCRRTDGKKWRCSQDAVANQKYCERHINRGRHRSRKPVEG 124
                         79****************************************986 PP
2QLQ522.1e-181046137
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll +++k
  Gorai.011G108400.2 10 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLNPLKK 46
                        59******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-91046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.0441146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-131144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.23680124IPR014977WRC domain
PfamPF088794.4E-2081123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRGGFNGVRG PFTPSQWIEL EHQALIYKYI TSNVAVPSNL LNPLKKSLYP YGFTSSPAGS  60
LPPNSLGWGS FHLGYSGSTD PEPERCRRTD GKKWRCSQDA VANQKYCERH INRGRHRSRK  120
PVEGQTGHAA SGTTNPKVVP MSSSMSTSVI TGSGASSSLA IAQQHQFKNL QSGATHHSAD  180
ALVNRIQDPW ASSVMSSTTN LKSNNSTFMI TKQGVPFAEF SPSDFGHVAY DSLVNLLHRS  240
SIVESKEYGP YLDFTTDQET LDQNLLHQFF DDWPKDESIH SVITWPGELR SDWTQLSMSI  300
PMTSSEFSSS SSSPAQEKLA LSPLSLSREF DPIQMGSVVK NDISDF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698732.10.0PREDICTED: growth-regulating factor 1-like
SwissprotO810012e-88GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A0D2UR950.0A0A0D2UR95_GOSRA; Uncharacterized protein
STRINGGorai.011G108400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-79growth-regulating factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]