PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G111100.1
Common NameB456_011G111100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 159aa    MW: 18075.6 Da    PI: 7.9275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G111100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.5e-175103198
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                         f kvlt+ dv k+  l +p++ ++++   +g+  +sk   ++de+g +W++++ y +++g+    vl++GW++Fv  +g+ +gD ++++ d
  Gorai.011G111100.1   5 FTKVLTNTDVEKR--LAVPNNSLKHFeleNGN--CSKSFEVKDENGSTWTFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQGDLITLYKD 90 
                         899**99999986..9*******777864444..9999***************.54444443559************************66 PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                          ++e+++++ v r
  Gorai.011G111100.1  91 VEEEASYKIEVQR 103
                         6588878877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.7013105IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-16492IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-204101No hitNo description
Gene3DG3DSA:2.40.330.102.3E-17494IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.7E-85105IPR003340B3 DNA binding domain
PfamPF023621.3E-145103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQILFTKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSFE VKDENGSTWT FRCYVRNDGA  60
YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEEEASYKIE VQRKIKLLGK ECWSSLEPDQ  120
PAGATAQVQR KILLFGKECW YFLEPEQPTD ATGKVIQA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617728.11e-103PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A0D2URE91e-114A0A0D2URE9_GOSRA; Uncharacterized protein
STRINGGorai.011G111100.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-11B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]