PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G113300.1
Common NameB456_011G113300, LOC105776925
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 183aa    MW: 20581.2 Da    PI: 6.9371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G113300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-183787155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s ++GVr ++ +gr+v+eIr p   g+++r++lg+fg++e+Aa+a++ a+  l+g
  Gorai.011G113300.1 37 SPFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSPEMAARAYDSAAFFLKG 87
                        679****887.**********8...557**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7053895IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-193896IPR016177DNA-binding domain
SMARTSM003801.1E-3238101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-273996IPR001471AP2/ERF domain
PfamPF008473.7E-113987IPR001471AP2/ERF domain
CDDcd000189.97E-273997No hitNo description
PRINTSPR003671.1E-103950IPR001471AP2/ERF domain
PRINTSPR003671.1E-107797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSLNEKEPCE FPSQTPAQPQ PNPHRVAKKR TRQDNHSPFR GVRKRRWGRY VSEIRLPGQK  60
TRIWLGSFGS PEMAARAYDS AAFFLKGDSA ILNFPELVGS LPRPESCSRR DIQSAAAKAA  120
LQESVGRVKD EEGPESFGWW DAVGMAAFEE VKASPLRFDS MEGELLSFME DDHHFFTSCF  180
EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1636951272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12745KKRTRQDNHSPFRGVRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.7960.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801940.0KP780194.1 Gossypium hirsutum C-repeat binding factor 11 (CBF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455344.11e-133PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391271e-33TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0D2USH01e-132A0A0D2USH0_GOSRA; Uncharacterized protein
STRINGGorai.011G113300.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2055856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]